Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6685

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15052 and 15053 are separated by 420 nucleotides15053 and 15054 are separated by 484 nucleotides mRNA_6684: 15052 - K04464 MAPK7 mitogen-activated protein kinase 7, at 1,436,143 to 1,438,277 15052 mRNA_6685: 15053 - Hypothetical Protein, at 1,438,698 to 1,439,183 15053 mRNA_6686: 15054 - K02875 RP-L14e, RPL14 large subunit ribosomal protein L14e, at 1,439,668 to 1,440,386 15054

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,437,796 + 15052 mRNA_6684 0.77 -0.7
1,437,923 + 15052 mRNA_6684 0.83 -0.7
1,438,215 - +1.1
1,438,226 + -1.3
1,438,365 + -1.9
1,438,381 - -0.2
1,438,385 - -0.9
1,438,392 + -2.6
1,438,519 - -1.9
1,438,520 - -1.4
1,438,522 - -2.5
1,438,637 - -0.3
1,438,792 + 15053 mRNA_6685 0.19 -2.4
1,439,119 + 15053 mRNA_6685 0.87 -1.2
1,439,127 - 15053 mRNA_6685 0.88 +0.1
1,439,238 - +0.3

Or see this region's nucleotide sequence