Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6687

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15054 and 15055 are separated by 430 nucleotides15055 and 15056 are separated by 286 nucleotides mRNA_6686: 15054 - K02875 RP-L14e, RPL14 large subunit ribosomal protein L14e, at 1,439,668 to 1,440,386 15054 mRNA_6687: 15055 - BLAST Wings apart-like protein [Xanthophyllomyces dendrorhous], at 1,440,817 to 1,442,910 15055 mRNA_6688: 15056 - BLAST Wings apart-like protein [Ceraceosorus bombacis], at 1,443,197 to 1,445,162 15056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,440,454 - +0.4
1,440,587 + -1.7
1,440,590 - -0.8
1,440,596 + -1.5
1,440,608 - -2.4
1,440,614 - -2.9
1,440,748 - -3.7
1,440,872 - -3.3
1,441,166 + 15055 mRNA_6687 0.17 -0.6
1,442,166 - 15055 mRNA_6687 0.64 -2.1
1,443,637 - 15056 mRNA_6688 0.22 +1.1
1,443,775 - 15056 mRNA_6688 0.29 +0.3

Or see this region's nucleotide sequence