Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6694

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15061 and 15062 are separated by 218 nucleotides mRNA_6693: 15061 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 1,458,235 to 1,460,963 15061 mRNA_6694: 15062 - Hypothetical Protein, at 1,461,182 to 1,464,230 15062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,460,276 + 15061 mRNA_6693 0.75 -2.0
1,460,459 + 15061 mRNA_6693 0.81 -1.2
1,460,566 - 15061 mRNA_6693 0.85 -1.7
1,460,699 - +0.3
1,460,721 + -0.2
1,461,007 - -0.4
1,463,799 - 15062 mRNA_6694 0.86 -2.2
1,463,916 - 15062 mRNA_6694 0.90 -2.1
1,463,971 + +0.4
1,464,337 + -0.1
1,464,432 - -1.5
1,464,546 - -2.5
1,464,829 + -0.3
1,464,945 + -0.6
1,464,948 - +0.5
1,464,969 + -1.6
1,465,095 - -0.6
1,465,115 + -3.4
1,465,115 + -1.7
1,465,122 - -1.5
1,465,133 + -2.6
1,465,133 + -0.8
1,465,137 - -2.6

Or see this region's nucleotide sequence