Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6709

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15076 and 15077 are separated by 165 nucleotides mRNA_6708: 15076 - KOG3743 Recombination signal binding protein-J kappa(CBF1, Su(H), HS2NF5), at 1,504,719 to 1,508,015 15076 mRNA_6709: 15077 - BLAST recombination signal binding protein-J kappa [Kal..., at 1,508,181 to 1,509,469 15077

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,507,402 + 15076 mRNA_6708 0.81 -0.7
1,507,922 - -0.6
1,508,415 - 15077 mRNA_6709 0.18 +0.1
1,509,190 + 15077 mRNA_6709 0.78 -2.1
1,509,301 - 15077 mRNA_6709 0.87 -2.7
1,509,577 + -1.1
1,509,612 + -0.0
1,509,932 + -3.9
1,509,950 - -0.4
1,509,983 + -2.3
1,510,130 - -0.8
1,510,149 - -0.8
1,510,150 + +0.0
1,510,151 + -2.4
1,510,154 - -2.0
1,510,157 - -2.1
1,510,158 - -0.9
1,510,311 + -1.4
1,510,323 - -1.5
1,510,346 - -0.2
1,510,468 + -1.7

Or see this region's nucleotide sequence