Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6710

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15078 and 15079 are separated by 550 nucleotides mRNA_6710: 15078 - SUPERFAMILY--SSF50685, at 1,510,573 to 1,512,987 15078 mRNA_6711: 15079 - Hypothetical Protein, at 1,513,538 to 1,514,008 15079

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,509,577 + -1.1
1,509,612 + -0.0
1,509,932 + -3.9
1,509,950 - -0.4
1,509,983 + -2.3
1,510,130 - -0.8
1,510,149 - -0.8
1,510,150 + +0.0
1,510,151 + -2.4
1,510,154 - -2.0
1,510,157 - -2.1
1,510,158 - -0.9
1,510,311 + -1.4
1,510,323 - -1.5
1,510,346 - -0.2
1,510,468 + -1.7
1,510,698 + -3.2
1,510,874 - 15078 mRNA_6710 0.12 -0.2
1,511,016 - 15078 mRNA_6710 0.18 -1.7
1,511,020 + 15078 mRNA_6710 0.19 -2.0
1,511,394 + 15078 mRNA_6710 0.34 -3.5
1,511,499 - 15078 mRNA_6710 0.38 -3.1
1,512,030 + 15078 mRNA_6710 0.60 -4.9
1,512,330 - 15078 mRNA_6710 0.73 -1.8
1,512,372 - 15078 mRNA_6710 0.74 +0.4
1,512,993 - -0.4
1,513,266 + -2.1
1,513,285 - -1.0
1,513,396 + -0.6
1,513,451 - -1.1
1,513,454 + -2.0
1,513,455 + +0.3
1,513,557 + -3.5
1,513,567 - -1.6
1,513,723 + 15079 mRNA_6711 0.39 -2.8
1,513,745 - 15079 mRNA_6711 0.44 -1.7
1,513,768 + 15079 mRNA_6711 0.49 -0.6
1,513,895 - 15079 mRNA_6711 0.76 +1.1

Or see this region's nucleotide sequence