Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6762

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15129 and 15130 are separated by 236 nucleotides15130 and 15131 are separated by 757 nucleotides mRNA_6761: 15129 - K00944 AK3 nucleoside-triphosphate--adenylate kinase, at 78,971 to 80,180 15129 mRNA_6762: 15130 - K02942 RP-LP1, RPLP1 large subunit ribosomal protein LP1, at 80,417 to 80,968 15130 mRNA_6763: 15131 - K11584 PPP2R5 serine/threonine-protein phosphatase 2A regulatory subunit B', at 81,726 to 84,068 15131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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79,446 + 15129 mRNA_6761 0.39 +1.1
79,481 + 15129 mRNA_6761 0.42 -1.2
79,606 + 15129 mRNA_6761 0.52 -1.3
79,666 + 15129 mRNA_6761 0.57 +2.1
79,745 + 15129 mRNA_6761 0.64 -2.0
79,747 - 15129 mRNA_6761 0.64 -0.9
79,848 - 15129 mRNA_6761 0.72 -1.6
80,023 - 15129 mRNA_6761 0.87 -1.4
80,049 - 15129 mRNA_6761 0.89 -2.5
80,308 + -1.3
81,380 + -2.5
81,386 + -0.6
81,541 + -0.8
81,561 + -1.8
81,572 + -2.0
81,694 + -2.4
81,703 + +0.8

Or see this region's nucleotide sequence