Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6772

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15139 and 15140 are separated by 841 nucleotides15140 and 15141 are separated by 359 nucleotides15141 and 15142 are separated by 169 nucleotides mRNA_6771: 15139 - Hypothetical Protein, at 100,994 to 101,449 15139 mRNA_6772: 15140 - KOG0202 Ca2+ transporting ATPase, at 102,291 to 102,787 15140 mRNA_6773: 15141 - HMMPfam-Cation transporter/ATPase, N-terminus-PF00690,SUPERFAMILY--SSF81665, at 103,147 to 103,439 15141 mRNA_6774: 15142 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 103,609 to 104,047 15142

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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101,436 - -2.1
101,542 - -0.3
101,694 + +0.2
102,198 - -1.7
102,200 + -3.5
102,221 + -1.8
102,335 - -3.4
102,483 - 15140 mRNA_6772 0.39 +1.1
102,628 - 15140 mRNA_6772 0.68 +0.8
102,637 + 15140 mRNA_6772 0.70 -2.7
103,031 + +0.4
103,568 - -1.5
103,720 + 15142 mRNA_6774 0.25 -0.1

Or see this region's nucleotide sequence