Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6813

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15180 and 15181 are separated by 451 nucleotides15181 and 15182 are separated by 940 nucleotides mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196,368 to 197,656 15180 mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198,108 to 198,984 15181 mRNA_6814: 15182 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 199,925 to 200,316 15182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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197,136 - 15180 mRNA_6812 0.60 -2.8
197,237 - 15180 mRNA_6812 0.67 -0.9
197,561 - -1.6
197,582 + -3.0
197,649 + +1.1
197,723 + +1.5
197,734 - -1.4
197,837 + -1.7
197,838 - -2.9
197,851 - -0.4
197,853 + -1.9
197,859 + -0.2
198,180 + -2.4
198,194 + -0.7
198,275 + 15181 mRNA_6813 0.19 -2.7
198,331 + 15181 mRNA_6813 0.25 -1.2
198,451 + 15181 mRNA_6813 0.39 -2.0
198,580 - 15181 mRNA_6813 0.54 +0.2
198,595 - 15181 mRNA_6813 0.56 -0.5
198,719 + 15181 mRNA_6813 0.70 -0.2
198,910 + -3.7
198,913 - -4.0
199,041 - -3.2
199,060 + -0.3
199,143 + +0.7
199,220 - -1.2
199,334 - -1.2
199,338 + -2.7
199,364 - +1.0
199,713 + -0.1

Or see this region's nucleotide sequence