Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6816

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15183 and 15184 are separated by 171 nucleotides15184 and 15185 are separated by 253 nucleotides mRNA_6815: 15183 - HMMPfam-PUB domain-PF09409,SUPERFAMILY--SSF143503, at 200,696 to 201,916 15183 mRNA_6816: 15184 - K02437 gcvH, GCSH glycine cleavage system H protein, at 202,088 to 202,810 15184 mRNA_6817: 15185 - KOG3525 Subtilisin-like proprotein convertase, at 203,064 to 206,112 15185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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201,095 - 15183 mRNA_6815 0.33 +0.6
201,116 - 15183 mRNA_6815 0.34 -1.8
201,195 - 15183 mRNA_6815 0.41 -1.2
201,570 + 15183 mRNA_6815 0.72 -3.5
201,673 - 15183 mRNA_6815 0.80 -1.4
201,829 + -1.5
201,834 - -0.2
201,959 + -0.5
202,851 + -3.5
202,859 - -1.5
202,865 + -1.1
202,866 - -3.8
202,876 - -0.6
202,888 - -3.0
202,902 + -0.2
202,919 + -0.2
202,924 - -0.9
203,045 - -1.0
203,070 - +0.0
203,744 + 15185 mRNA_6817 0.22 -3.6
203,744 + 15185 mRNA_6817 0.22 -2.3

Or see this region's nucleotide sequence