Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6836

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15204 and 15205 are separated by 496 nucleotides mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237,797 to 238,899 15204 mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239,396 to 240,785 15205

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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236,811 - -1.1
236,813 + -0.9
236,817 - -3.0
236,818 + -0.1
236,823 - -0.3
236,824 - -3.4
236,825 - -0.9
236,829 - -1.2
236,831 + -2.7
236,836 - +0.5
236,836 - -0.7
236,836 - -2.3
236,840 + -2.1
236,840 + -1.4
236,858 - +0.1
236,991 + -0.9
237,010 + -0.5
237,025 - -1.9
237,027 - -1.9
237,055 - -1.7
237,064 - -2.2
237,109 + -0.8
237,145 - +0.1
237,145 - -2.6
237,154 + -0.6
237,159 + +1.0
237,262 + -1.3
237,266 + -2.6
237,274 + -1.9
237,274 + -1.0
237,278 + -1.4
237,292 + -1.6
237,299 - -1.1
237,325 - -0.0
237,333 - -2.2
237,361 + +0.4
237,366 + -0.5
237,377 + -3.0
237,378 + -2.5
237,378 + -0.1
237,384 + -2.8
237,415 - -1.0
237,428 + -0.2
237,475 + -0.8
237,519 - -2.8
237,519 - -0.9
237,521 - -2.3
237,526 + -2.3
237,531 + -2.1
237,533 - +0.2
237,533 - -0.1
237,541 + -2.1
237,541 + -2.4
237,541 + -1.0
237,541 + -1.8
237,545 - +0.4
237,557 - +3.0
237,563 + -3.0
237,571 - -0.3
237,571 - -0.1
237,817 - -3.6
237,868 + -2.8
238,080 + 15204 mRNA_6836 0.26 -2.1
238,426 - 15204 mRNA_6836 0.57 +0.1
238,477 + 15204 mRNA_6836 0.62 +0.4
238,528 - 15204 mRNA_6836 0.66 -0.9
238,821 - -1.9
238,848 - -2.5
238,855 + -1.2
238,857 + +0.5
238,859 + -1.3
238,866 + +0.4
238,993 - -3.4
239,016 - -2.7
239,025 - -0.7
239,027 + -3.0
239,040 - +0.8
239,057 - -1.1
239,058 + -1.3
239,060 + -1.1
239,073 + -0.7
239,158 + -1.1
239,159 - +1.6
239,185 - -0.1
239,201 + -0.1
239,218 - -1.8
239,275 - +0.5
239,293 - +0.5
239,323 + +0.8
239,470 - -0.5
239,622 - 15205 mRNA_6837 0.16 -2.4
239,624 - 15205 mRNA_6837 0.16 +1.6
239,630 + 15205 mRNA_6837 0.17 -1.1
239,770 + 15205 mRNA_6837 0.27 -2.3

Or see this region's nucleotide sequence