Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6886

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15254 and 15255 are separated by 200 nucleotides mRNA_6886: 15254 - K09493 CCT1, TCP1 T-complex protein 1 subunit alpha, at 356,245 to 358,443 15254 mRNA_6887: 15255 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 358,644 to 359,526 15255

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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355,280 - -3.1
355,281 + -1.0
355,421 + -3.0
355,533 - -1.7
355,573 + -1.9
355,713 - -0.8
355,891 - -1.8
355,921 + -1.9
356,009 - -1.5
356,153 + -1.7
358,619 - -2.1
358,634 + -1.1
358,644 + +0.3
358,644 + +1.7
358,801 - 15255 mRNA_6887 0.18 -1.0
359,074 + 15255 mRNA_6887 0.49 -1.0
359,368 - 15255 mRNA_6887 0.82 -1.5

Or see this region's nucleotide sequence