Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6947

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15314 and 15315 are separated by 636 nucleotides mRNA_6946: 15314 - K04713 SUR2 sphinganine C4-monooxygenase, at 499,195 to 500,447 15314 mRNA_6947: 15315 - K02555 MIH1 M-phase inducer tyrosine phosphatase, at 501,084 to 504,114 15315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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500,551 + -3.2
500,570 + -2.2
500,666 + +0.8
500,685 - -0.1
500,695 + -1.1
500,700 + -1.5
500,711 - -2.3
500,736 + -1.8
500,802 + +0.8
500,868 - -1.5
500,893 + -0.8
500,963 + +0.3
500,993 + -2.2
500,998 + -2.8
501,087 + -2.0
501,131 + -2.7
501,237 + -2.6
501,338 + -0.4
501,338 + -1.4
501,338 + -0.5
501,467 + 15315 mRNA_6947 0.13 -2.8
503,884 + -0.1
504,343 - -2.7
504,348 + -0.3
504,423 + -3.0
504,482 + -2.4
504,483 + -2.5
504,486 - -0.4
504,486 - -1.4
504,582 + -0.2
504,630 + -2.0
504,698 - -1.9
504,772 + -2.5
504,775 + -2.8
504,798 + -2.6
504,799 + -2.2
504,799 + -1.6
504,799 + -2.6
504,906 - -2.2
505,082 - -1.6
505,086 + -2.6
505,087 - -1.0
505,097 - -2.0
505,103 + +0.2

Or see this region's nucleotide sequence