Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6956

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15323 and 15324 are separated by 507 nucleotides15324 and 15325 are separated by 113 nucleotides mRNA_6955: 15323 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 523,015 to 527,499 15323 mRNA_6956: 15324 - K00720 UGCG ceramide glucosyltransferase, at 528,007 to 529,680 15324 mRNA_6957: 15325 - K13100 CWC22 pre-mRNA-splicing factor CWC22, at 529,794 to 532,653 15325

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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527,203 - -0.7
527,963 + -1.4
528,061 - -0.5
528,092 + -5.7
528,386 - 15324 mRNA_6956 0.23 -3.3
528,564 + 15324 mRNA_6956 0.33 -1.7
528,824 + 15324 mRNA_6956 0.49 -1.4
528,851 + 15324 mRNA_6956 0.50 -1.2
528,860 - 15324 mRNA_6956 0.51 -1.3
529,572 + +0.4
529,724 - -0.8
529,727 - -2.2
529,737 + -3.3
529,752 + +0.2

Or see this region's nucleotide sequence