Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6969

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15336 and 15337 are separated by 144 nucleotides mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560,422 to 561,850 15336 mRNA_6969: 15337 - K17261 CAP1_2, SRV2 adenylyl cyclase-associated protein, at 561,995 to 564,059 15337

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
561,034 + 15336 mRNA_6968 0.43 -1.5
561,068 + 15336 mRNA_6968 0.45 -0.1
561,206 - 15336 mRNA_6968 0.55 -1.2
561,381 - 15336 mRNA_6968 0.67 -1.2
561,846 - -2.3
563,669 + 15337 mRNA_6969 0.81 -2.8
563,813 - 15337 mRNA_6969 0.88 -1.3
564,098 + -0.7
564,125 + +0.6
564,131 + -1.9
564,306 + -3.9
564,320 + +0.4
564,385 - +0.6
564,439 - +0.1
564,860 + -0.1

Or see this region's nucleotide sequence