Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6970

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15338 and 15339 are separated by 374 nucleotides mRNA_6970: 15338 - Hypothetical Protein, at 566,123 to 566,867 15338 mRNA_6971: 15339 - K03671 trxA thioredoxin 1, at 567,242 to 568,041 15339

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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565,317 - -0.8
565,317 - +0.1
565,747 + -3.4
565,776 + -1.2
566,343 + 15338 mRNA_6970 0.30 -0.2
566,759 - 15338 mRNA_6970 0.85 +0.1
566,812 - -1.9
566,913 - -2.4
566,929 - -1.2
566,931 - -2.8
567,101 - -0.8
567,224 - +1.8
567,226 - -1.6
567,236 - -0.9
567,236 - -0.6
567,385 + 15339 mRNA_6971 0.18 -1.0
567,501 - 15339 mRNA_6971 0.32 -3.5

Or see this region's nucleotide sequence