Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6981

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15348 and 15349 are separated by 294 nucleotides15349 and 15350 are separated by 527 nucleotides mRNA_6980: 15348 - SUPERFAMILY--SSF51445, at 588,631 to 590,610 15348 mRNA_6981: 15349 - KOG0613 Projectin/twitchin and related proteins, at 590,905 to 593,177 15349 mRNA_6982: 15350 - K11497 CENPC centromere protein C, at 593,705 to 596,436 15350

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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590,182 + 15348 mRNA_6980 0.78 +1.1
590,613 + -2.3
590,636 + -1.8
591,064 + -2.3
591,317 - 15349 mRNA_6981 0.18 -0.4
591,375 + 15349 mRNA_6981 0.21 -0.7
591,480 + 15349 mRNA_6981 0.25 -2.5
591,514 + 15349 mRNA_6981 0.27 -1.8
591,614 + 15349 mRNA_6981 0.31 +0.6
591,947 - 15349 mRNA_6981 0.46 +0.3
592,145 + 15349 mRNA_6981 0.55 -1.5
592,398 + 15349 mRNA_6981 0.66 -1.5
592,523 - 15349 mRNA_6981 0.71 -2.2
592,539 - 15349 mRNA_6981 0.72 -1.4
592,765 - 15349 mRNA_6981 0.82 -2.8
592,799 - 15349 mRNA_6981 0.83 -2.7
592,962 - +0.1
593,056 - -1.1
593,236 - -0.1
593,249 - -1.6
593,267 + -0.5
593,268 + -1.6
593,364 + -1.0
593,394 - -0.7
593,403 - -2.8
593,407 + -3.4
593,469 + +1.4
593,568 + -1.2
593,615 + -1.6
593,625 - -1.2
593,704 + +0.4
593,741 - -0.9

Or see this region's nucleotide sequence