Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7006

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15373 and 15374 are separated by 268 nucleotides15374 and 15375 are separated by 741 nucleotides mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653,075 to 653,981 15373 mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654,250 to 659,147 15374 mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659,889 to 660,691 15375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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653,269 - 15373 mRNA_7005 0.21 -1.5
653,270 - 15373 mRNA_7005 0.21 -1.1
653,274 - 15373 mRNA_7005 0.22 -1.0
653,278 + 15373 mRNA_7005 0.22 -2.6
653,286 + 15373 mRNA_7005 0.23 -0.9
653,288 - 15373 mRNA_7005 0.23 -2.1
653,294 + 15373 mRNA_7005 0.24 -2.2
653,410 - 15373 mRNA_7005 0.37 -1.6
653,864 - 15373 mRNA_7005 0.87 -1.6
653,977 + -0.1
654,148 - -0.9
654,166 - -0.4
654,255 - -1.2
654,322 + -2.0
654,410 + -0.8
654,598 - -0.7
654,598 + -3.1
655,126 + 15374 mRNA_7006 0.18 -1.2
655,269 - 15374 mRNA_7006 0.21 -0.9
655,607 + 15374 mRNA_7006 0.28 -1.8
655,856 - 15374 mRNA_7006 0.33 -0.9
655,922 - 15374 mRNA_7006 0.34 -1.0
655,961 + 15374 mRNA_7006 0.35 +1.0
656,048 - 15374 mRNA_7006 0.37 -0.7
656,093 - 15374 mRNA_7006 0.38 -1.1
656,356 - 15374 mRNA_7006 0.43 -1.3
656,467 - 15374 mRNA_7006 0.45 -0.1
656,512 + 15374 mRNA_7006 0.46 -0.4
657,068 - 15374 mRNA_7006 0.58 -1.7
657,176 - 15374 mRNA_7006 0.60 +1.1
657,421 + 15374 mRNA_7006 0.65 -0.1
657,565 - 15374 mRNA_7006 0.68 +0.8
657,573 - 15374 mRNA_7006 0.68 +0.3
657,864 + 15374 mRNA_7006 0.74 -1.5
657,885 - 15374 mRNA_7006 0.74 -1.1
658,051 + 15374 mRNA_7006 0.78 -3.8
658,061 - 15374 mRNA_7006 0.78 -3.4
658,194 - 15374 mRNA_7006 0.81 -1.0
658,194 + 15374 mRNA_7006 0.81 -1.2
658,195 + 15374 mRNA_7006 0.81 -1.2
658,400 - 15374 mRNA_7006 0.85 -1.6
658,463 - 15374 mRNA_7006 0.86 -1.3
658,690 - -0.4
658,773 - -1.5
658,925 - -3.2
658,937 - +0.3
658,939 + -0.4
659,067 - -0.2
659,079 + -0.8
659,234 + -0.1
659,235 - +2.2
659,374 - -0.4
659,388 - -2.6
659,493 + -0.9
659,506 - -2.3
659,519 - -2.5
659,534 + -0.5
659,539 - -2.1
659,540 + +0.1
659,548 + -3.1
659,564 - -1.1
659,579 - -0.7
659,579 - -0.5
659,584 + -3.3
659,709 - -0.4
659,736 - -1.1
659,841 + -1.5
659,857 + -0.9
660,001 - 15375 mRNA_7007 0.14 -1.6
660,132 + 15375 mRNA_7007 0.30 -2.0

Or see this region's nucleotide sequence