Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7044

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15411 and 15412 are separated by 194 nucleotides mRNA_7043: 15411 - Hypothetical Protein, at 736,926 to 740,766 15411 mRNA_7044: 15412 - KOG4299 PHD Zn-finger protein, at 740,961 to 743,698 15412

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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740,660 + -0.9
740,866 + -0.1
741,139 - -1.1
741,804 - 15412 mRNA_7044 0.31 -0.4
743,761 - -2.2
743,774 + -1.0
743,778 + -1.9
743,779 - -2.1
743,780 + -0.6
743,786 - -0.1
743,789 + -0.7
743,789 + -1.1
743,789 + -1.1
743,789 + -4.5
743,795 + -0.0
743,798 - -3.4
743,803 + -1.8
743,930 + -3.0
743,947 - -2.8
743,949 - -1.0
743,958 - -1.4
744,238 - -1.8
744,244 - -0.7
744,388 - -3.1
744,407 - -0.6
744,411 + -1.3
744,536 - +1.0

Or see this region's nucleotide sequence