Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7050

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15417 and 15418 are separated by 70 nucleotides15418 and 15419 are separated by 241 nucleotides mRNA_7049: 15417 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 758,628 to 760,981 15417 mRNA_7050: 15418 - K08678 UXS1, uxs UDP-glucuronate decarboxylase, at 761,052 to 762,821 15418 mRNA_7051: 15419 - HMMPfam-Translation initiation factor eIF3 subunit-PF08597, at 763,063 to 764,121 15419

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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760,288 + 15417 mRNA_7049 0.71 +1.2
760,346 + 15417 mRNA_7049 0.73 -0.9
760,476 + 15417 mRNA_7049 0.79 -2.4
760,498 - 15417 mRNA_7049 0.79 +1.1
760,615 - 15417 mRNA_7049 0.84 -2.2
760,766 + -1.0
760,777 - -1.0
760,803 - -2.5
761,075 - +0.0
761,688 + 15418 mRNA_7050 0.36 -3.0
761,841 + 15418 mRNA_7050 0.45 -0.2
761,924 + 15418 mRNA_7050 0.49 -2.3
762,107 - 15418 mRNA_7050 0.60 -1.1
762,117 + 15418 mRNA_7050 0.60 +0.3
762,237 - 15418 mRNA_7050 0.67 -3.3
762,379 + 15418 mRNA_7050 0.75 -1.6
762,408 - 15418 mRNA_7050 0.77 -1.6
762,411 + 15418 mRNA_7050 0.77 -0.6
762,527 - 15418 mRNA_7050 0.83 -0.9
762,540 - 15418 mRNA_7050 0.84 -1.2
762,557 + 15418 mRNA_7050 0.85 -1.5
762,673 - -2.9
762,820 - -0.5
762,833 - -2.2
762,967 - -1.8
762,976 - -0.9
762,988 - -1.0

Or see this region's nucleotide sequence