Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7074

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15442 and 15443 are separated by 541 nucleotides mRNA_7074: 15442 - K02218 CSNK1, CKI casein kinase 1, at 821,512 to 823,166 15442 mRNA_7075: 15443 - HMMPfam-Late embryogenesis abundant protein-PF03168,SUPERFAMILY--SSF117070, at 823,708 to 824,890 15443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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820,652 - -3.2
820,839 - -1.2
821,966 - 15442 mRNA_7074 0.27 +0.9
823,087 - -2.4
823,245 - -0.1
823,255 - -0.1
823,395 + -1.8
823,405 + -3.0
823,417 + -2.8
823,531 + -1.2
823,533 - -1.7
823,540 - -1.9
823,545 - -1.9
823,549 + -3.5
823,550 - -0.6
823,551 - -1.8
823,555 - -2.0
823,559 - +0.4
823,560 - -0.7
823,568 - -3.8
823,568 - -1.3
823,580 - -0.9
823,706 + -1.4
823,738 + -0.9
823,792 - +0.5
823,893 + 15443 mRNA_7075 0.16 -0.6
824,014 - 15443 mRNA_7075 0.26 -1.8

Or see this region's nucleotide sequence