Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7082

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15449 and 15450 are separated by 112 nucleotides15450 and 15451 are separated by 7 nucleotides mRNA_7081: 15449 - K00272 DDO D-aspartate oxidase, at 836,490 to 837,896 15449 mRNA_7082: 15450 - K20406 NPRL3 nitrogen permease regulator 3-like protein, at 838,009 to 840,569 15450 mRNA_7083: 15451 - K18803 HPM1 protein-histidine N-methyltransferase, at 840,577 to 841,991 15451

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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837,515 + 15449 mRNA_7081 0.73 -1.4
837,670 - 15449 mRNA_7081 0.84 -1.6
837,831 - -3.1
837,838 + +0.3
837,966 - -2.6
837,967 - -0.4
837,982 + +0.5
837,992 - -1.6
838,007 - -1.2
838,008 + -1.6
838,015 + +0.1
838,137 + +0.6
838,279 - 15450 mRNA_7082 0.11 -3.0
838,901 + 15450 mRNA_7082 0.35 -0.0
839,488 + 15450 mRNA_7082 0.58 -0.7
840,067 - 15450 mRNA_7082 0.80 -1.6
840,193 - 15450 mRNA_7082 0.85 +0.2
841,411 + 15451 mRNA_7083 0.59 -0.9

Or see this region's nucleotide sequence