Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7099

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15466 and 15467 are separated by 382 nucleotides15467 and 15468 are separated by 375 nucleotides mRNA_7098: 15466 - KOG2633 Hismacro and SEC14 domain-containing proteins, at 877,934 to 879,350 15466 mRNA_7099: 15467 - K12845 SNU13, NHP2L U4/U6 small nuclear ribonucleoprotein SNU13, at 879,733 to 880,505 15467 mRNA_7100: 15468 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 880,881 to 881,621 15468

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
878,806 - 15466 mRNA_7098 0.62 -0.8
878,925 - 15466 mRNA_7098 0.70 -2.4
878,929 + 15466 mRNA_7098 0.70 -1.0
878,948 - 15466 mRNA_7098 0.72 -3.3
879,240 + -0.4
879,410 + +0.4
879,524 + -1.5
879,526 + -1.8
879,535 - -0.1
879,548 - -0.3
880,836 - -4.0
880,847 + -1.0
880,996 + 15468 mRNA_7100 0.16 -0.3
881,007 - 15468 mRNA_7100 0.17 -4.4
881,149 - 15468 mRNA_7100 0.36 -0.8
881,365 + 15468 mRNA_7100 0.65 -4.5
881,383 + 15468 mRNA_7100 0.68 -0.2

Or see this region's nucleotide sequence