Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7128

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15495 and 15496 are separated by 309 nucleotides15496 and 15497 are separated by 166 nucleotides mRNA_7127: 15495 - BLAST adenylate cyclase-associated protein [Moesziomyces an..., at 941,404 to 943,862 15495 mRNA_7128: 15496 - K00939 adk, AK adenylate kinase, at 944,172 to 945,488 15496 mRNA_7129: 15497 - K10627 RAD18 E3 ubiquitin-protein ligase RAD18, at 945,655 to 947,671 15497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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943,518 - 15495 mRNA_7127 0.86 -0.5
944,148 + -2.5
945,527 + -1.0
945,533 - -0.7
945,555 - -1.7
945,564 + +0.4
945,567 + -2.0
945,570 + -0.7
945,661 - -1.0
946,137 + 15497 mRNA_7129 0.24 -2.8

Or see this region's nucleotide sequence