Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7186

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15553 and 15554 are separated by 670 nucleotides mRNA_7185: 15553 - K07300 chaA, CAX Ca2+-H+ antiporter, at 1,073,734 to 1,075,504 15553 mRNA_7186: 15554 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 1,076,175 to 1,077,434 15554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,075,714 - -1.9
1,075,717 + -1.6
1,075,751 - +0.7
1,075,774 - -1.6
1,075,867 - -2.1
1,075,886 + -0.3
1,076,020 - -0.1
1,076,028 - -1.5
1,076,029 - -1.0
1,076,043 + -0.9
1,076,045 - -1.6
1,076,048 - -1.7
1,076,055 - -0.4
1,076,056 + -1.9
1,076,056 - -0.9
1,076,090 - -1.1
1,076,110 + -0.1
1,076,133 - -1.2
1,076,197 - -1.2
1,076,210 - -0.6
1,076,241 + -0.8
1,076,478 - 15554 mRNA_7186 0.24 -2.2
1,076,485 + 15554 mRNA_7186 0.25 -2.0
1,076,487 - 15554 mRNA_7186 0.25 -1.5
1,076,956 + 15554 mRNA_7186 0.62 -1.6
1,076,976 - 15554 mRNA_7186 0.64 -1.9
1,077,168 - 15554 mRNA_7186 0.79 -2.5
1,077,405 + -1.6
1,077,492 + -1.5
1,077,526 - -2.5
1,077,583 - -0.2
1,077,595 + -0.8
1,077,940 - -1.3
1,078,218 - -1.2
1,078,231 + -2.8
1,078,232 - -0.3
1,078,242 - +1.2
1,078,249 - -2.1
1,078,250 + -2.4
1,078,251 + -2.9
1,078,261 + -3.5
1,078,261 + -1.5
1,078,261 - -2.7
1,078,262 - -2.9
1,078,264 + -1.0
1,078,264 + -0.7
1,078,264 + -0.8
1,078,356 + +0.2
1,078,403 - +0.1

Or see this region's nucleotide sequence