Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7204

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15571 and 15572 are separated by 397 nucleotides15572 and 15573 are separated by 493 nucleotides mRNA_7203: 15571 - SUPERFAMILY--SSF52047, at 1,116,612 to 1,117,999 15571 mRNA_7204: 15572 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,118,397 to 1,120,170 15572 mRNA_7205: 15573 - Hypothetical Protein, at 1,120,664 to 1,121,084 15573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,117,588 + 15571 mRNA_7203 0.70 -1.0
1,117,625 + 15571 mRNA_7203 0.73 -1.2
1,117,745 - 15571 mRNA_7203 0.82 -0.7
1,117,933 + +0.0
1,118,154 - -1.8
1,118,455 + -2.0
1,118,514 - -0.1
1,118,634 + 15572 mRNA_7204 0.13 -2.0
1,119,225 + 15572 mRNA_7204 0.47 -0.8
1,119,325 - 15572 mRNA_7204 0.52 -1.0
1,119,820 + 15572 mRNA_7204 0.80 -2.9
1,119,924 + 15572 mRNA_7204 0.86 +0.0
1,120,039 - -0.7
1,120,055 - +0.2
1,120,060 - +0.3
1,120,071 - -2.0
1,120,104 + -0.8
1,120,224 + -2.8
1,120,228 - -4.7
1,120,229 + +0.9
1,120,234 + -2.3
1,120,237 + -2.2
1,120,258 + -0.3
1,120,363 + +0.4
1,120,421 + -3.4
1,120,479 + -3.0
1,120,484 + -0.3
1,120,506 - +0.7
1,120,516 + -2.6
1,120,569 + -1.4
1,120,582 - +0.7
1,120,584 + -2.5
1,120,828 + 15573 mRNA_7205 0.39 -2.4
1,120,835 + 15573 mRNA_7205 0.41 -1.8
1,120,838 + 15573 mRNA_7205 0.41 -1.5
1,120,864 + 15573 mRNA_7205 0.48 -0.6
1,120,926 - 15573 mRNA_7205 0.62 +1.1
1,120,968 - 15573 mRNA_7205 0.72 +1.3
1,120,969 - 15573 mRNA_7205 0.72 -2.6
1,120,970 + 15573 mRNA_7205 0.73 +0.2
1,120,980 + 15573 mRNA_7205 0.75 -2.2
1,121,002 + 15573 mRNA_7205 0.80 -1.3
1,121,050 + -1.7
1,121,103 + -0.1
1,121,104 + -1.5
1,121,116 - -2.8
1,121,137 + +0.6
1,121,141 + -1.1
1,121,152 + -0.8
1,121,153 - -0.6
1,121,153 - -1.6
1,121,154 - -3.7
1,121,166 - -1.8
1,121,170 - -2.0

Or see this region's nucleotide sequence