Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7260

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15627 and 15628 are separated by 511 nucleotides mRNA_7259: 15627 - K15188 CCNT cyclin T, at 1,241,817 to 1,243,103 15627 mRNA_7260: 15628 - K09230 SCAN SCAN domain-containing zinc finger protein, at 1,243,615 to 1,245,304 15628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,243,165 + -3.1
1,243,182 + -2.5
1,243,301 + -2.4
1,243,413 - -2.7
1,243,441 - -0.4
1,243,697 - -0.4
1,243,733 + -2.1
1,243,929 - 15628 mRNA_7260 0.19 +0.5
1,244,177 - 15628 mRNA_7260 0.33 -0.4
1,244,177 - 15628 mRNA_7260 0.33 -2.2
1,244,177 - 15628 mRNA_7260 0.33 +1.1
1,244,183 + 15628 mRNA_7260 0.34 -0.2
1,244,198 - 15628 mRNA_7260 0.34 -2.2
1,244,442 - 15628 mRNA_7260 0.49 +1.3
1,244,576 + 15628 mRNA_7260 0.57 -2.6
1,244,627 + 15628 mRNA_7260 0.60 -2.0
1,244,708 + 15628 mRNA_7260 0.65 +0.7
1,244,914 - 15628 mRNA_7260 0.77 -2.1
1,245,180 + -1.3
1,245,180 + +1.8
1,245,536 - -2.3
1,245,796 - -2.3
1,245,909 - +1.0
1,245,909 - -2.1
1,245,928 + -0.2
1,246,064 - -1.0
1,246,236 + -0.5
1,246,242 + +0.4
1,246,250 + -0.3

Or see this region's nucleotide sequence