Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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14 + +0.5
14 + -1.9
14 + -3.6
14 + -1.1
22 + -2.2
29 + -2.7
35 + -1.4
45 + -1.8
66 + -1.7
68 + -0.0
71 - +1.4
105 + +0.3
120 - -1.6
120 + -2.2
121 - -0.6
122 - -2.1
126 + +0.2
126 + -0.2
131 - -2.9
135 - -2.4
135 + -0.9
135 + -1.6
135 + +1.9
135 - -2.0
142 - -1.3
148 + -1.9
153 + -2.4
159 - -1.1
159 - -3.1
161 + -0.6
168 - -0.4
195 + -2.0
233 + -0.9
263 + 15688 mRNA_7320 0.11 +0.9
267 - 15688 mRNA_7320 0.11 -2.2
301 - 15688 mRNA_7320 0.14 -0.1
310 - 15688 mRNA_7320 0.14 -1.8
313 + 15688 mRNA_7320 0.15 -2.5
313 + 15688 mRNA_7320 0.15 -2.5
319 + 15688 mRNA_7320 0.15 -4.3
322 - 15688 mRNA_7320 0.15 -0.7
340 - 15688 mRNA_7320 0.16 -0.5
345 + 15688 mRNA_7320 0.17 -0.3
357 + 15688 mRNA_7320 0.18 +0.1
359 + 15688 mRNA_7320 0.18 -1.4
365 - 15688 mRNA_7320 0.18 -1.0
401 - 15688 mRNA_7320 0.21 -0.8
401 - 15688 mRNA_7320 0.21 +0.3
401 + 15688 mRNA_7320 0.21 -1.4
405 + 15688 mRNA_7320 0.21 -3.7
415 + 15688 mRNA_7320 0.22 -0.9
428 - 15688 mRNA_7320 0.23 -1.6
461 - 15688 mRNA_7320 0.25 -0.9
462 + 15688 mRNA_7320 0.25 -0.6
466 - 15688 mRNA_7320 0.25 -2.2
482 + 15688 mRNA_7320 0.26 -1.9
488 - 15688 mRNA_7320 0.27 -1.0
573 - 15688 mRNA_7320 0.33 -1.5
594 - 15688 mRNA_7320 0.34 -0.8
595 + 15688 mRNA_7320 0.34 -1.2
595 + 15688 mRNA_7320 0.34 -0.4
625 - 15688 mRNA_7320 0.36 +1.7
644 + 15688 mRNA_7320 0.38 -3.8
644 + 15688 mRNA_7320 0.38 -3.5
648 + 15688 mRNA_7320 0.38 -1.9
654 - 15688 mRNA_7320 0.38 -2.4
654 + 15688 mRNA_7320 0.38 -2.2
713 + 15688 mRNA_7320 0.43 -2.2
753 - 15688 mRNA_7320 0.45 -1.7
756 - 15688 mRNA_7320 0.46 -0.1
763 + 15688 mRNA_7320 0.46 -1.6
765 + 15688 mRNA_7320 0.46 -0.8
778 + 15688 mRNA_7320 0.47 -0.5
811 - 15688 mRNA_7320 0.49 -1.8
921 + 15688 mRNA_7320 0.57 -0.4
945 + 15688 mRNA_7320 0.59 -2.3
1,059 + 15688 mRNA_7320 0.67 -2.3
1,167 + 15688 mRNA_7320 0.74 -1.2
1,174 + 15688 mRNA_7320 0.75 +0.6
1,182 - 15688 mRNA_7320 0.75 +1.2
1,196 + 15688 mRNA_7320 0.76 -0.0
1,218 + 15688 mRNA_7320 0.78 -2.1
1,258 + 15688 mRNA_7320 0.81 -0.1
1,326 - 15688 mRNA_7320 0.85 -4.6
1,360 + 15688 mRNA_7320 0.88 -3.2
1,366 + 15688 mRNA_7320 0.88 +0.0
1,497 - -0.2
1,518 + -0.2
1,582 + -1.3
1,666 - -2.7
1,675 + -3.1
1,789 - -1.0
1,907 + -1.4
1,929 + -1.5
1,948 + -3.0
2,105 - -0.8
2,297 - 15689 mRNA_7321 0.19 -0.7
2,508 - 15689 mRNA_7321 0.31 -2.8
2,521 + 15689 mRNA_7321 0.32 -2.5
2,526 + 15689 mRNA_7321 0.32 -0.2
2,529 - 15689 mRNA_7321 0.32 -1.2
2,529 - 15689 mRNA_7321 0.32 -1.2

Or see this region's nucleotide sequence