Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7345

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15712 and 15713 are separated by 516 nucleotides mRNA_7344: 15712 - K01697 E4.2.1.22, CBS cystathionine beta-synthase, at 46,801 to 48,602 15712 mRNA_7345: 15713 - K00264 GLT1 glutamate synthase (NADPH/NADH), at 49,119 to 56,418 15713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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48,306 + 15712 mRNA_7344 0.84 -2.0
48,340 - 15712 mRNA_7344 0.85 -1.8
48,514 - +0.8
48,656 - -0.8
48,657 - -2.1
48,658 - -1.4
48,659 + -0.5
48,665 - -0.9
48,670 + -3.2
48,673 + -0.4
48,682 + -2.0
48,686 - -1.9
48,691 + -0.2
48,695 + -0.3
48,785 - -3.2
48,809 - -1.7
48,810 - +0.4
48,812 - -1.6
48,834 - -0.2
48,857 - -3.4
48,869 - -1.9
48,871 - -1.8
48,877 - -1.4
48,891 + -1.0
48,892 - -2.9
48,948 - -0.4
49,009 - -0.6
49,086 + -0.6
49,113 - -0.3
49,193 + -1.9
49,449 - -2.8
49,679 + +0.1
49,704 + -0.2
49,812 + -0.9
50,053 - 15713 mRNA_7345 0.13 -1.8
50,127 - 15713 mRNA_7345 0.14 -2.6
50,301 - 15713 mRNA_7345 0.16 -2.0
50,312 + 15713 mRNA_7345 0.16 -2.5
50,390 - 15713 mRNA_7345 0.17 -4.5
50,843 + 15713 mRNA_7345 0.24 +0.7
50,894 - 15713 mRNA_7345 0.24 +0.1
50,915 + 15713 mRNA_7345 0.25 -1.1
50,941 - 15713 mRNA_7345 0.25 -0.7
51,223 + 15713 mRNA_7345 0.29 -0.6
51,441 - 15713 mRNA_7345 0.32 +0.8
51,801 - 15713 mRNA_7345 0.37 -0.2
51,849 + 15713 mRNA_7345 0.37 -1.9
51,884 + 15713 mRNA_7345 0.38 -0.6
51,912 + 15713 mRNA_7345 0.38 -0.4
52,138 - 15713 mRNA_7345 0.41 -1.6
52,148 + 15713 mRNA_7345 0.41 -1.2
52,148 + 15713 mRNA_7345 0.41 -1.0
52,187 - 15713 mRNA_7345 0.42 -2.2
52,265 + 15713 mRNA_7345 0.43 -1.9
52,705 + 15713 mRNA_7345 0.49 -2.5
52,726 - 15713 mRNA_7345 0.49 -2.9
52,726 - 15713 mRNA_7345 0.49 -4.0
52,726 - 15713 mRNA_7345 0.49 -2.0
52,777 + 15713 mRNA_7345 0.50 -0.1
52,804 + 15713 mRNA_7345 0.50 -0.1
52,904 - 15713 mRNA_7345 0.52 -0.8
53,045 - 15713 mRNA_7345 0.54 -3.7
53,083 - 15713 mRNA_7345 0.54 -0.3
53,148 - 15713 mRNA_7345 0.55 +0.3
54,129 - 15713 mRNA_7345 0.69 -1.7
54,246 - 15713 mRNA_7345 0.70 -3.6
54,429 - 15713 mRNA_7345 0.73 -0.1
54,448 + 15713 mRNA_7345 0.73 -2.4
54,574 + 15713 mRNA_7345 0.75 +2.3
54,789 + 15713 mRNA_7345 0.78 -1.5
54,825 + 15713 mRNA_7345 0.78 -3.2
55,326 + 15713 mRNA_7345 0.85 -0.8
55,636 + 15713 mRNA_7345 0.89 +2.7
55,636 + 15713 mRNA_7345 0.89 -1.9
55,839 - -1.2
55,864 - -0.3
56,023 - +0.1
56,392 - -0.5
56,461 - -1.6
56,600 - -1.9
56,632 + -1.8
56,640 + -0.9
56,648 + -2.0
56,651 + +0.5
56,793 - -3.6
56,794 + -1.4
56,803 + -3.1
56,811 + +0.7
56,817 + -3.0
56,818 - -4.7
56,832 + -1.8
56,845 + -3.5
56,913 - -2.8
56,918 - -1.4
56,938 - +0.4
56,951 + +2.0
56,964 - -2.9
56,976 + +1.7
56,977 + -0.5
56,981 + -1.8
56,985 + -0.0
56,986 + -3.2
56,990 - -0.5
56,991 - -1.0
56,997 + -0.5
57,052 - +0.3
57,055 + -1.0
57,065 + -1.7
57,074 + -2.2
57,079 - +0.8
57,091 - -0.9
57,092 + +0.3
57,096 - -0.1
57,098 - -1.9
57,101 + -4.7
57,101 + -2.2
57,101 + -1.3
57,110 - -1.5
57,120 - -0.1
57,195 + -3.9
57,206 - -1.4
57,219 + -2.3
57,243 + -1.4
57,254 + -0.3
57,260 - -2.5
57,266 + -0.4
57,267 - -3.8
57,268 + -2.4
57,272 - -2.0
57,291 + -0.5
57,347 + -1.7

Or see this region's nucleotide sequence