Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7373

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15740 and 15741 are separated by 532 nucleotides15741 and 15742 are separated by 926 nucleotides mRNA_7372: 15740 - K03869 CUL3 cullin 3, at 116,214 to 119,420 15740 mRNA_7373: 15741 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 119,953 to 122,182 15741 mRNA_7374: 15742 - Hypothetical Protein, at 123,109 to 123,612 15742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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119,043 + 15740 mRNA_7372 0.88 -0.8
119,184 - -1.9
119,344 + +0.9
119,362 - -2.9
119,490 + -0.6
119,493 - -2.2
119,629 + -0.8
119,639 - -0.7
119,641 + -2.5
119,648 + -2.2
119,649 + -2.1
119,663 - -0.7
119,807 + +0.2
119,930 - -2.5
120,210 - 15741 mRNA_7373 0.12 +0.1
121,960 - -2.4
121,966 + -4.1
122,119 + -0.1
122,266 + +0.3
122,266 + -1.3
122,271 - -0.6
122,306 - -2.4
122,307 + -1.8
122,360 + -2.1
122,401 - -2.6
122,468 + +0.1
122,529 - -0.6
122,557 + -0.3
122,573 + -0.2
122,584 - +0.4
122,586 - -3.1
122,597 + -2.0
122,604 + -1.3
122,625 - -0.8

Or see this region's nucleotide sequence