Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7448

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15816 and 15817 are separated by 149 nucleotides mRNA_7448: 15816 - BLAST putative protein of unknown function [Pseudozyma ..., at 301,730 to 303,793 15816 mRNA_7449: 15817 - BLAST GH19984 [Drosophila grimshawi], at 303,943 to 305,130 15817

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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301,172 - -1.1
301,343 + -2.5
301,495 + +0.3
301,731 - +0.8
301,751 - -1.6
301,874 - -0.8
301,882 + -1.1
302,451 + 15816 mRNA_7448 0.35 -0.6
303,822 - -0.0
304,104 - 15817 mRNA_7449 0.14 -0.4
304,108 - 15817 mRNA_7449 0.14 -0.5
304,396 - 15817 mRNA_7449 0.38 -0.5

Or see this region's nucleotide sequence