Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7452

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15819 and 15820 are separated by 717 nucleotides15820 and 15821 are separated by 195 nucleotides mRNA_7451: 15819 - Hypothetical Protein, at 307,312 to 308,652 15819 mRNA_7452: 15820 - K14852 RRS1 regulator of ribosome biosynthesis, at 309,370 to 310,696 15820 mRNA_7453: 15821 - K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2, at 310,892 to 312,649 15821

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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308,404 - 15819 mRNA_7451 0.81 -2.6
308,412 + 15819 mRNA_7451 0.82 -3.3
308,419 + 15819 mRNA_7451 0.83 -1.7
308,695 - -0.9
308,708 + -1.5
308,710 - -1.5
308,717 - -1.4
308,723 + +0.4
308,838 - -2.2
308,846 + -1.1
308,846 + -0.7
308,849 - +0.6
308,854 - -3.7
308,860 - -0.4
308,962 + -0.6
308,986 + -2.4
309,145 + -2.1
309,315 - +0.8
309,316 - -2.2
310,646 + -1.2
310,653 + -0.5
310,669 + -1.3
310,670 - -0.2
310,682 - -2.9
310,685 + -0.7

Or see this region's nucleotide sequence