Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7471

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15838 and 15839 are separated by 472 nucleotides mRNA_7470: 15838 - K12815 DHX38, PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16, at 356,316 to 361,042 15838 mRNA_7471: 15839 - K00838 ARO8 aromatic amino acid aminotransferase I, at 361,515 to 364,061 15839

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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361,063 + -0.2
361,236 + -2.8
361,326 - -1.4
361,347 - -2.5
361,516 - +1.5
361,528 - -2.1
361,810 + 15839 mRNA_7471 0.12 -0.5
361,948 + 15839 mRNA_7471 0.17 +0.4
362,338 + 15839 mRNA_7471 0.32 +1.2
362,928 + 15839 mRNA_7471 0.55 -0.5
363,079 - 15839 mRNA_7471 0.61 -2.3
363,082 + 15839 mRNA_7471 0.62 -2.3
363,083 + 15839 mRNA_7471 0.62 +1.7
363,098 + 15839 mRNA_7471 0.62 +0.6
363,221 - 15839 mRNA_7471 0.67 -1.0
363,345 + 15839 mRNA_7471 0.72 -0.5
363,642 - 15839 mRNA_7471 0.84 -1.8
363,663 - 15839 mRNA_7471 0.84 -1.2
363,920 - +1.9
363,936 - +1.3
363,950 - +0.0
363,962 - -1.1
363,963 + -0.3
364,564 + -2.9
364,641 - -0.5
364,641 - -0.9
364,695 - -2.3
364,725 - -0.2
364,829 - -1.8

Or see this region's nucleotide sequence