Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7474

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15841 and 15842 are separated by 276 nucleotides mRNA_7473: 15841 - Hypothetical Protein, at 367,495 to 368,778 15841 mRNA_7474: 15842 - HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756, at 369,055 to 372,143 15842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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368,180 + 15841 mRNA_7473 0.53 -2.5
368,360 + 15841 mRNA_7473 0.67 -1.9
368,481 + 15841 mRNA_7473 0.77 -1.1
368,497 + 15841 mRNA_7473 0.78 -2.3
368,498 + 15841 mRNA_7473 0.78 -0.8
368,513 - 15841 mRNA_7473 0.79 +2.7
368,626 + 15841 mRNA_7473 0.88 -2.3
368,626 + 15841 mRNA_7473 0.88 -0.9
368,644 + 15841 mRNA_7473 0.89 -0.9
368,749 - -2.6
368,758 + -4.0
368,765 + -2.0
368,769 - -2.3
368,774 + -0.3
368,776 + -0.9
368,778 - -2.7
368,780 - -1.2
368,786 - -0.3
368,800 - -2.3
368,801 + -1.0
368,805 + -1.2
368,806 + +1.1
368,825 + +0.3
368,912 - -1.2
368,938 + -1.3
368,942 - -0.2
368,944 - -0.2
368,944 - -3.0
368,947 + -2.5
368,947 - -1.6
368,947 + -1.1
368,953 + -3.1
368,956 - -0.0
368,956 - +0.5
368,958 - -0.5
368,963 + -0.7
368,965 - -0.2
368,965 - -0.7
368,967 - -2.0
368,971 - -0.2
368,975 - +0.3
368,977 + -3.1
368,980 - -0.1
368,981 - -0.1
368,982 - -0.0
368,983 + -1.6
368,985 - +1.5
368,986 - -0.7
368,986 - -0.8
368,997 + +0.1
369,002 - -0.6
369,006 - -0.7
369,011 - +0.0
369,035 + -0.2
369,068 - -0.2
369,071 - -1.3
369,074 + -1.4
369,077 - -1.6
369,078 - -1.1
369,079 - -0.6
369,081 - -0.9
369,085 + -2.6
369,094 + -2.6
369,100 + -0.5
369,102 - -1.4
369,102 - +0.4
369,104 + -1.2
369,107 + +0.3
369,108 - -2.4
369,111 + -1.4
369,111 + -1.4
369,111 + -2.4
369,116 - -2.2
369,117 - +1.5
369,127 - -1.0
369,129 - -1.4
369,132 - -1.0
369,139 + -1.8
369,139 + -1.5
369,152 - -1.6
369,217 + +1.6
369,237 + -0.2
369,241 - -1.3
369,262 - -1.8
369,263 + -1.9
369,263 + -1.7
369,269 + -0.2
369,344 + +1.3
369,402 + 15842 mRNA_7474 0.11 +0.5
369,412 + 15842 mRNA_7474 0.12 -2.1
369,433 - 15842 mRNA_7474 0.12 -2.4
369,448 - 15842 mRNA_7474 0.13 -2.7
369,472 - 15842 mRNA_7474 0.13 -3.0
369,507 + 15842 mRNA_7474 0.15 -2.1
369,564 - 15842 mRNA_7474 0.16 -1.0
369,577 + 15842 mRNA_7474 0.17 -2.3
369,586 + 15842 mRNA_7474 0.17 -1.7
369,601 - 15842 mRNA_7474 0.18 -1.8
369,728 + 15842 mRNA_7474 0.22 -1.2
369,731 + 15842 mRNA_7474 0.22 -1.5
369,853 + 15842 mRNA_7474 0.26 -1.5
369,853 - 15842 mRNA_7474 0.26 -2.9
370,557 - 15842 mRNA_7474 0.49 -3.2
371,020 - 15842 mRNA_7474 0.64 -3.2
371,027 + 15842 mRNA_7474 0.64 -1.3
371,186 - 15842 mRNA_7474 0.69 -2.6
371,320 + 15842 mRNA_7474 0.73 -0.2
371,333 + 15842 mRNA_7474 0.74 -0.6
371,339 + 15842 mRNA_7474 0.74 -0.4
371,473 + 15842 mRNA_7474 0.78 -0.1
371,480 + 15842 mRNA_7474 0.79 -2.2
371,613 - 15842 mRNA_7474 0.83 -2.7
371,633 + 15842 mRNA_7474 0.83 +0.4
371,639 + 15842 mRNA_7474 0.84 -3.4
371,760 + 15842 mRNA_7474 0.88 -0.6
372,089 + -2.2
372,210 - -2.7
372,218 + -1.0
372,227 + -2.6
372,240 + +0.3
372,246 + -1.6
372,250 + -0.3
372,256 + -1.4
372,262 - -1.1
372,266 + +1.6
372,276 + -2.1
372,397 + -0.8
372,409 + -1.2
372,415 + -2.0
372,550 - -0.5
372,586 + -0.6
372,701 - +1.0
372,702 + -1.1
372,705 - -2.7
372,708 + -2.2
372,842 - -1.8
372,849 + -1.0
373,005 - -2.0
373,110 - -2.0
373,112 - -2.0

Or see this region's nucleotide sequence