Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7477

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15844 and 15845 are separated by 366 nucleotides15845 and 15846 are separated by 246 nucleotides15846 and 15847 are separated by 205 nucleotides mRNA_7476: 15844 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 378,155 to 380,112 15844 mRNA_7477: 15845 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 380,479 to 382,307 15845 mRNA_7478: 15846 - Hypothetical Protein, at 382,554 to 382,817 15846 mRNA_7479: 15847 - Hypothetical Protein, at 383,023 to 384,509 15847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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379,787 - 15844 mRNA_7476 0.83 -0.4
380,000 + -2.5
380,087 + -1.7
380,093 - -0.6
380,119 + -1.2
380,140 - -1.9
380,234 + -3.4
380,235 - -3.0
380,235 + +0.6
380,236 + -2.5
380,356 + -1.6
380,359 + -4.2
380,370 - -1.2
380,384 + +0.0
380,408 - -3.1
380,415 - +0.9
380,420 - -1.4
380,422 - -0.8
380,442 + -1.5
380,546 + -1.2
380,582 - -1.0
380,588 - -1.0
380,589 + -2.1
380,590 + +0.8
380,592 + -1.5
380,601 + -1.3
380,618 + -0.8
380,705 + 15845 mRNA_7477 0.12 -2.2
380,705 - 15845 mRNA_7477 0.12 -2.2
380,719 + 15845 mRNA_7477 0.13 -1.1
380,724 + 15845 mRNA_7477 0.13 -1.8
380,732 - 15845 mRNA_7477 0.14 -3.1
380,734 - 15845 mRNA_7477 0.14 +1.1
380,735 - 15845 mRNA_7477 0.14 -2.6
380,737 - 15845 mRNA_7477 0.14 -3.8
380,740 + 15845 mRNA_7477 0.14 -1.6
380,743 + 15845 mRNA_7477 0.14 -3.2
380,746 - 15845 mRNA_7477 0.15 -0.8
380,752 + 15845 mRNA_7477 0.15 -1.4
380,756 + 15845 mRNA_7477 0.15 -1.4
380,758 + 15845 mRNA_7477 0.15 -0.7
380,759 + 15845 mRNA_7477 0.15 -0.7
380,769 - 15845 mRNA_7477 0.16 +0.3
380,881 + 15845 mRNA_7477 0.22 +0.4
380,884 + 15845 mRNA_7477 0.22 +0.3
380,889 - 15845 mRNA_7477 0.22 +0.0
380,912 - 15845 mRNA_7477 0.24 -3.0
381,022 - 15845 mRNA_7477 0.30 -1.7
381,187 - 15845 mRNA_7477 0.39 -0.9
381,292 - 15845 mRNA_7477 0.44 -2.4
381,323 - 15845 mRNA_7477 0.46 -0.2
381,327 + 15845 mRNA_7477 0.46 -0.2
381,475 + 15845 mRNA_7477 0.54 +0.5
381,909 - 15845 mRNA_7477 0.78 -1.0
382,347 - +0.4
382,347 + -2.5
382,352 - +1.4
382,464 - -1.3
382,623 + 15846 mRNA_7478 0.26 +0.1
382,624 - 15846 mRNA_7478 0.27 -3.0
382,653 + 15846 mRNA_7478 0.38 -0.6
382,655 + 15846 mRNA_7478 0.38 -0.1
382,934 + +2.3
382,937 - +0.0
382,937 + -4.1
383,256 + 15847 mRNA_7479 0.16 +1.6
383,256 + 15847 mRNA_7479 0.16 -0.3

Or see this region's nucleotide sequence