Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7530

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15897 and 15898 are separated by 677 nucleotides15898 and 15899 are separated by 346 nucleotides mRNA_7529: 15897 - Hypothetical Protein, at 501,522 to 502,180 15897 mRNA_7530: 15898 - Hypothetical Protein, at 502,858 to 503,836 15898 mRNA_7531: 15899 - K14001 SIL1, SLS1 nucleotide exchange factor SIL1, at 504,183 to 505,474 15899

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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501,860 + 15897 mRNA_7529 0.51 -1.0
501,978 - 15897 mRNA_7529 0.69 -2.0
502,072 - 15897 mRNA_7529 0.83 -0.2
503,001 - 15898 mRNA_7530 0.15 -0.8
503,033 + 15898 mRNA_7530 0.18 -2.0
503,172 + 15898 mRNA_7530 0.32 -0.6
503,283 + 15898 mRNA_7530 0.43 -0.9
503,296 - 15898 mRNA_7530 0.45 -1.0
503,443 + 15898 mRNA_7530 0.60 +0.5
503,587 + 15898 mRNA_7530 0.74 -2.4
503,609 + 15898 mRNA_7530 0.77 -1.9
503,729 - 15898 mRNA_7530 0.89 +0.5
503,732 - 15898 mRNA_7530 0.89 -2.9
503,734 - 15898 mRNA_7530 0.89 -0.7
503,739 - -0.2
503,776 + -3.1

Or see this region's nucleotide sequence