Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7548

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15915 and 15916 are separated by 266 nucleotides mRNA_7547: 15915 - Hypothetical Protein, at 534,942 to 536,762 15915 mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537,029 to 539,584 15916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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536,312 + 15915 mRNA_7547 0.75 -0.8
536,336 - 15915 mRNA_7547 0.77 -1.7
536,342 + 15915 mRNA_7547 0.77 -0.6
536,434 - 15915 mRNA_7547 0.82 -0.6
536,712 - +0.8
536,784 - -1.6
536,793 + -0.2
536,885 - -2.0
536,930 + +0.4
537,063 + +0.2
537,338 - 15916 mRNA_7548 0.12 +1.4
537,378 + 15916 mRNA_7548 0.14 -1.2
537,470 + 15916 mRNA_7548 0.17 -1.4
537,957 + 15916 mRNA_7548 0.36 -0.8
538,048 - 15916 mRNA_7548 0.40 -2.2
538,178 - 15916 mRNA_7548 0.45 +0.1
538,196 + 15916 mRNA_7548 0.46 -1.5
538,345 - 15916 mRNA_7548 0.51 -0.6
538,638 - 15916 mRNA_7548 0.63 -0.5
538,883 - 15916 mRNA_7548 0.73 -2.7
539,056 + 15916 mRNA_7548 0.79 +2.0
539,103 - 15916 mRNA_7548 0.81 -2.1
539,109 - 15916 mRNA_7548 0.81 -2.0
539,216 + 15916 mRNA_7548 0.86 -1.8
539,243 + 15916 mRNA_7548 0.87 -1.2
539,350 + -1.7
539,387 + -1.2
539,545 - -0.2
539,557 + -1.2
539,642 - -0.7
539,644 - -1.0
539,654 - -0.5
539,659 - -0.9
539,661 - -1.4
539,677 + -1.1
539,696 - -0.2
539,762 - -2.2
539,772 - -0.7
539,774 - -0.6
539,782 - -1.1
539,788 + -0.8
539,796 - -0.7
539,802 - -2.6
539,802 - -1.5
539,803 - -0.9
539,803 - -0.4
539,806 + -1.6
539,815 + -0.8
539,821 - -0.9
539,821 + -1.5
539,823 + -4.4
539,826 - -3.3
539,828 - -3.8
539,833 + -0.4
539,839 + +0.0
539,839 - -1.2
539,848 - -1.9
539,849 - -1.2
539,849 - +1.6
539,850 - -1.4
539,850 + -2.3
539,851 - -1.4
539,852 - -0.9
539,865 + +0.8
539,872 + -1.0
539,874 - -1.7
539,876 + -2.6
539,877 - -1.1
539,898 + -2.9
539,963 - +0.8
539,966 - +0.5
539,971 - -1.0
539,981 + -3.2
539,994 + -0.2
539,998 - -0.4
539,999 - -1.4
540,000 - -0.6
540,003 - -0.1
540,004 + -2.7
540,004 + -1.6
540,005 - -0.5
540,006 - +0.0
540,006 + -3.7
540,006 + -0.2
540,006 + +0.5
540,008 + -0.3
540,012 + -2.0
540,015 - -1.4
540,016 + -0.7
540,016 + -3.3
540,016 + -1.6
540,022 + -1.8
540,023 + -1.0
540,027 + -1.3
540,027 + -2.1
540,028 - -2.2
540,029 + -2.6
540,038 + -2.5
540,060 - -2.5
540,061 - -2.4
540,061 - -0.6
540,063 + -2.0
540,068 - -1.7
540,072 - -1.5
540,076 + -1.3
540,081 - -1.3
540,084 + -0.8
540,085 - -0.5
540,092 - -0.9
540,094 - -3.3
540,098 - -1.8
540,102 + +0.2
540,109 + -2.0
540,118 + -0.1
540,150 - -1.1
540,152 + -0.3
540,154 - -2.3
540,156 - -1.5
540,157 - -2.4
540,158 - -1.4
540,160 + -0.8
540,160 + -2.1
540,160 + -1.1
540,161 - -2.1
540,163 + -2.1
540,168 - -1.7
540,169 - +0.2
540,173 - -1.7
540,173 - -2.4
540,173 - -1.9
540,174 - -1.0
540,178 + -0.7
540,178 + -2.4
540,179 - -2.7
540,180 + -2.1
540,194 + -0.1
540,194 + -1.5
540,200 - +0.4
540,210 + -1.4
540,217 + -2.5
540,234 + -1.8
540,236 + -3.8
540,239 - +0.3
540,246 - -0.2
540,248 + -1.9
540,251 - -1.6
540,252 + -1.5
540,256 - -0.5
540,264 + -1.9
540,266 - +0.3
540,269 - +1.0
540,270 + -1.7
540,274 - -0.1
540,283 - -2.2
540,286 + +0.2
540,288 + -0.9
540,289 + -1.1
540,295 - -1.7
540,297 - -2.1
540,390 + -1.6
540,406 - +0.5
540,411 - -0.4
540,432 + -1.8
540,441 + -0.7
540,446 - +0.2
540,448 - -0.6
540,451 + -3.1
540,565 - -2.5
540,576 - +0.1

Or see this region's nucleotide sequence