Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7572

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15939 and 15940 are separated by 356 nucleotides15940 and 15941 are separated by 566 nucleotides mRNA_7571: 15939 - K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A, at 594,088 to 595,626 15939 mRNA_7572: 15940 - Hypothetical Protein, at 595,983 to 596,534 15940 mRNA_7573: 15941 - KOG0331 ATP-dependent RNA helicase, at 597,101 to 600,100 15941

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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595,060 + 15939 mRNA_7571 0.63 -0.2
595,941 - +0.1
596,365 + 15940 mRNA_7572 0.69 -1.5
596,647 + -2.5
596,819 + -0.6
596,990 + +0.1
597,217 - -0.8
597,241 + -0.7

Or see this region's nucleotide sequence