Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7581

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15948 and 15949 are separated by 410 nucleotides15949 and 15950 are separated by 855 nucleotides mRNA_7580: 15948 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 609,831 to 611,279 15948 mRNA_7581: 15949 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 611,690 to 614,027 15949 mRNA_7582: 15950 - KOG2534 DNA polymerase IV (family X), at 614,883 to 616,136 15950

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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611,323 - +1.1
611,326 + -0.8
611,338 + -3.0
611,344 - -1.8
611,346 - -0.9
611,347 + -0.4
611,355 - -0.6
611,355 + -3.7
611,355 + -0.8
611,357 - -2.8
611,363 + -1.7
611,363 + +0.1
611,364 + -4.2
611,498 - -0.6
611,660 + -2.7
611,928 + 15949 mRNA_7581 0.10 -0.6
611,955 + 15949 mRNA_7581 0.11 -3.5
612,337 - 15949 mRNA_7581 0.28 -1.2
612,546 - 15949 mRNA_7581 0.37 +0.1
612,681 + 15949 mRNA_7581 0.42 -1.9
612,710 - 15949 mRNA_7581 0.44 -1.2
613,109 - 15949 mRNA_7581 0.61 -1.9
613,145 + 15949 mRNA_7581 0.62 -1.9
613,449 - 15949 mRNA_7581 0.75 -1.8
613,828 - -0.7
614,145 - -1.1
614,164 + -2.2
614,309 - -0.5
614,575 + -1.6
614,666 + -0.7
614,915 + -0.2

Or see this region's nucleotide sequence