Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7640

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16007 and 16008 are separated by 397 nucleotides16008 and 16009 are separated by 250 nucleotides mRNA_7639: 16007 - K11095 SNRPC U1 small nuclear ribonucleoprotein C, at 745,269 to 745,635 16007 mRNA_7640: 16008 - K12622 LSM3 U6 snRNA-associated Sm-like protein LSm3, at 746,033 to 746,457 16008 mRNA_7641: 16009 - Hypothetical Protein, at 746,708 to 747,858 16009

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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746,688 - -2.1
746,707 - -2.6
746,951 - 16009 mRNA_7641 0.21 -1.7
747,167 - 16009 mRNA_7641 0.40 -1.0
747,404 + 16009 mRNA_7641 0.60 -2.2
747,445 - 16009 mRNA_7641 0.64 +0.3

Or see this region's nucleotide sequence