Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7663

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16030 and 16031 are separated by 455 nucleotides mRNA_7662: 16030 - K13519 LPT1, ALE1 lysophospholipid acyltransferase, at 788,706 to 790,925 16030 mRNA_7663: 16031 - K03305 TC.POT proton-dependent oligopeptide transporter, POT family, at 791,381 to 793,587 16031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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790,402 - 16030 mRNA_7662 0.76 -0.2
790,975 - -2.1
790,988 - -0.5
790,990 + -4.6
790,993 - -1.7
790,995 - -1.8
791,015 - +0.1
791,036 + -0.9
791,092 - -1.7
791,131 - -3.6
791,133 + -0.5
791,151 + -2.4
791,156 + -1.8
791,193 - -1.0
791,199 - -0.9
791,212 + -2.4
791,286 + +0.7
791,290 - -0.0
791,295 + -2.1
791,295 + -1.9
791,312 + -0.1
791,315 - -1.1
791,335 - -1.5
791,339 - -0.8
791,431 + -2.6
791,444 + -2.2
791,446 + -0.3
791,447 - -0.8
791,475 + +1.9
791,760 + 16031 mRNA_7663 0.17 -0.0
791,851 + 16031 mRNA_7663 0.21 -1.9
791,990 - 16031 mRNA_7663 0.28 -2.3
792,109 + 16031 mRNA_7663 0.33 +0.5
792,184 + 16031 mRNA_7663 0.36 -1.6
792,554 + 16031 mRNA_7663 0.53 +0.2
792,903 - 16031 mRNA_7663 0.69 -1.5
793,070 + 16031 mRNA_7663 0.77 +1.3
793,071 - 16031 mRNA_7663 0.77 -0.3
793,126 - 16031 mRNA_7663 0.79 -1.2
793,222 + 16031 mRNA_7663 0.83 -1.3
793,297 - 16031 mRNA_7663 0.87 -0.3
793,402 - -0.9
793,452 + -1.0
793,610 + -2.0
793,657 - -0.8
793,690 - -1.8
793,709 - +0.9
793,759 - -1.8
793,769 + -0.2
793,774 - -1.0
793,787 - -2.1
793,795 - +0.6
793,832 + +1.0
793,917 + +0.7
793,919 - -0.1
793,929 + -2.3
793,930 - -2.2
793,936 + -2.3
793,936 - -1.8
793,939 + +0.8
793,940 + +0.4
793,941 + -0.6
793,941 + -1.8
793,948 - -1.0
793,955 - -2.2
793,957 - -1.8
793,960 + -1.3
793,963 - -0.8
793,968 - -1.8
793,977 - -2.5
793,994 + -1.2
794,005 + -0.6
794,006 - -1.0
794,008 - -0.4
794,009 + -4.3
794,034 + +0.2
794,035 + +0.7
794,037 + -2.3
794,053 + -1.0
794,058 + -1.4
794,071 - -0.1
794,074 + -1.8
794,077 - +0.6
794,078 + -0.9
794,081 + -2.0
794,082 + -0.0
794,093 - -1.9
794,096 - -1.8
794,098 - -1.2
794,104 + -1.7
794,105 - -2.7
794,115 + -0.9
794,117 + -3.6
794,122 - +0.7
794,122 - -3.9
794,123 - -3.6
794,127 - -0.8
794,130 + -1.9
794,134 + -2.8
794,135 - +1.2
794,136 - -2.2
794,138 + +0.2
794,141 + -1.9
794,152 - -0.8
794,155 + -1.1
794,161 + -2.5
794,162 - -2.1
794,164 - -0.1
794,164 - -0.6
794,165 - -3.3
794,167 - -0.5
794,168 + -1.1
794,174 + -1.6
794,175 + -1.2
794,177 - -1.0
794,177 + +2.0
794,179 - -0.9
794,180 - -2.6
794,180 - -0.8
794,182 + +0.1
794,184 + -2.5
794,185 + -3.0
794,185 - -1.7
794,186 + -2.4
794,187 - +0.5
794,187 - -0.4
794,202 - +0.0
794,203 + -2.1
794,203 + -0.4
794,203 - +0.2
794,204 + -2.2
794,206 + -0.8
794,209 + +0.9
794,210 - -2.7
794,223 - -2.3
794,227 - -0.1
794,227 + -2.0
794,229 + -1.9
794,230 - -0.4
794,233 + -0.7
794,233 - -3.8
794,236 - -1.4
794,237 + -0.3
794,238 + -1.1
794,240 - -0.5
794,245 - -0.5
794,245 - -1.2
794,248 + -0.1
794,248 - -1.0
794,252 - -0.3
794,253 - +0.4
794,259 - -0.0
794,259 + -0.3
794,261 + -2.5
794,262 + -0.3
794,265 + -0.9
794,267 - -1.0
794,278 - -1.4
794,281 - -0.6
794,283 + +0.3
794,292 + -1.6
794,372 + -0.0
794,396 + -1.5
794,418 + -1.8
794,422 + -0.5
794,427 + -0.6
794,447 + -0.6
794,453 - -1.6
794,459 + -1.6
794,496 - -0.8
794,517 - -1.4
794,521 - -1.9
794,525 + -2.5
794,529 + -2.3
794,542 - +0.7
794,555 + -0.9
794,556 + -2.1
794,558 + -2.2
794,561 - -3.0
794,563 + -1.1
794,568 + -2.9
794,575 + -2.1
794,576 - +0.2
794,578 - -0.7

Or see this region's nucleotide sequence