Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7667

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16034 and 16035 are separated by 143 nucleotides16035 and 16036 are separated by 418 nucleotides mRNA_7666: 16034 - K20184 VPS41 vacuolar protein sorting-associated protein 41, at 798,298 to 802,330 16034 mRNA_7667: 16035 - Hypothetical Protein, at 802,474 to 802,850 16035 mRNA_7668: 16036 - K18042 STYX serine/threonine/tyrosine-interacting protein, at 803,269 to 804,354 16036

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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801,845 - 16034 mRNA_7666 0.88 -2.1
801,903 + 16034 mRNA_7666 0.89 -2.0
802,011 + -0.1
802,045 + -0.8
802,047 + -2.0
802,050 + -0.2
802,057 - -1.5
802,169 - -1.5
802,182 + -1.9
802,658 + 16035 mRNA_7667 0.49 +0.4
802,776 - 16035 mRNA_7667 0.80 -2.1
802,783 - 16035 mRNA_7667 0.82 -2.4
802,903 - -1.6
802,942 + -1.1
802,975 - -3.5
803,100 - -2.2
803,511 + 16036 mRNA_7668 0.22 +0.7

Or see this region's nucleotide sequence