Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7687

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16054 and 16055 are separated by 153 nucleotides16055 and 16056 are separated by 103 nucleotides mRNA_7686: 16054 - K06185 ABCF2 ATP-binding cassette, subfamily F, member 2, at 836,407 to 838,350 16054 mRNA_7687: 16055 - SUPERFAMILY--SSF48371, at 838,504 to 840,672 16055 mRNA_7688: 16056 - Hypothetical Protein, at 840,776 to 844,586 16056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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838,272 + -2.0
838,484 + -0.8
838,565 - -1.1
838,622 + -3.8
838,724 - 16055 mRNA_7687 0.10 -1.9
839,003 - 16055 mRNA_7687 0.23 +1.1
839,004 - 16055 mRNA_7687 0.23 -1.3
839,046 + 16055 mRNA_7687 0.25 -2.9
839,148 + 16055 mRNA_7687 0.30 -0.7
839,162 - 16055 mRNA_7687 0.30 -2.8
839,291 + 16055 mRNA_7687 0.36 -2.0
839,407 - 16055 mRNA_7687 0.42 -0.6
839,563 + 16055 mRNA_7687 0.49 -0.8
839,564 - 16055 mRNA_7687 0.49 -0.1
839,632 + 16055 mRNA_7687 0.52 -2.7
839,635 - 16055 mRNA_7687 0.52 -1.7
839,726 + 16055 mRNA_7687 0.56 -0.8
839,769 - 16055 mRNA_7687 0.58 -2.0
839,770 - 16055 mRNA_7687 0.58 -2.1
839,776 - 16055 mRNA_7687 0.59 -1.1
839,893 - 16055 mRNA_7687 0.64 -0.4
839,893 - 16055 mRNA_7687 0.64 +0.5
839,901 + 16055 mRNA_7687 0.64 -0.3
839,966 - 16055 mRNA_7687 0.67 -2.6
839,988 + 16055 mRNA_7687 0.68 -2.9
840,006 - 16055 mRNA_7687 0.69 -0.1
840,297 - 16055 mRNA_7687 0.83 -0.1
840,337 + 16055 mRNA_7687 0.85 -0.6
840,619 - -3.0
840,623 - -1.5
840,623 - -1.2
840,624 + -0.7
840,626 - -0.5
840,627 + -3.3
840,774 + +0.4
840,781 + +0.4
840,883 - -3.6
840,920 + -1.0
841,048 - -2.0
841,217 - 16056 mRNA_7688 0.12 -1.1
841,329 - 16056 mRNA_7688 0.15 -0.0
841,364 - 16056 mRNA_7688 0.15 -0.4
841,503 - 16056 mRNA_7688 0.19 -0.4
841,542 - 16056 mRNA_7688 0.20 +1.0
841,604 + 16056 mRNA_7688 0.22 +1.2
841,651 + 16056 mRNA_7688 0.23 -0.5
841,661 - 16056 mRNA_7688 0.23 -1.1

Or see this region's nucleotide sequence