Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7699

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16066 and 16067 are separated by 190 nucleotides mRNA_7698: 16066 - Hypothetical Protein, at 864,285 to 865,332 16066 mRNA_7699: 16067 - K11681 SWR1 helicase SWR1, at 865,523 to 871,227 16067

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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864,794 - 16066 mRNA_7698 0.49 -1.6
864,982 + 16066 mRNA_7698 0.67 -1.4
865,147 - 16066 mRNA_7698 0.82 -0.3
865,147 - 16066 mRNA_7698 0.82 +0.4
865,306 + -0.1
871,306 + -1.1
871,313 - +0.2
871,316 + -2.5
871,317 + -1.9
871,324 + -0.6
871,325 + -0.5
871,335 + +0.1
871,339 - +0.1
871,339 + -0.0
871,339 + -2.6
871,438 - -2.1
871,443 + -1.5
871,451 - +0.9
871,471 - +0.5
871,472 - -1.5
871,475 + -0.0
871,475 + +0.0
871,479 + +1.1
871,548 - -1.4
871,947 + -0.8
871,975 + -3.3
871,978 + -0.1
872,059 - -1.9
872,089 - -1.8
872,099 + -0.9
872,102 - -1.5

Or see this region's nucleotide sequence