Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7728

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16095 and 16096 are separated by 981 nucleotides16096 and 16097 are separated by 867 nucleotides mRNA_7727: 16095 - K13354 SLC25A17, PMP34 solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17, at 940,127 to 941,686 16095 mRNA_7728: 16096 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 942,668 to 943,581 16096 mRNA_7729: 16097 - KOG0537 Cytochrome b5, at 944,449 to 944,897 16097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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941,705 - -0.7
941,720 + -2.7
941,832 + -0.7
941,842 - -1.0
941,966 - -1.1
941,970 - -1.8
941,981 + -1.3
942,063 + -1.8
942,115 - -3.7
942,136 + +0.4
942,290 + -1.2
942,438 - -1.0
942,471 + +0.2
943,499 + +2.1
943,527 + -0.4
943,630 + -0.3
943,769 - -0.2
943,778 - -3.6
943,910 + -0.8
943,926 - -1.6
943,942 - -1.7
943,947 - -0.3
943,959 - +0.6
944,077 - -1.6
944,077 - -0.1
944,081 + -0.8
944,081 + -3.7
944,081 + -1.3
944,097 - +0.4
944,098 + +0.6
944,101 + -0.3
944,134 + -0.6
944,198 - -0.6

Or see this region's nucleotide sequence