Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7736

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16104 and 16105 are separated by 583 nucleotides mRNA_7736: 16104 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 956,261 to 958,930 16104 mRNA_7737: 16105 - HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909, at 959,514 to 960,315 16105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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955,444 + -0.7
955,581 - -0.3
955,607 - -2.4
955,610 + -1.9
955,736 + -0.2
955,741 - -0.5
955,747 - -0.4
955,748 + -0.2
955,749 - -2.6
955,750 + +0.6
955,751 - -1.5
956,039 + -2.0
956,100 - -1.2
956,122 - -1.9
956,148 + +0.1
958,988 - +0.3
958,996 + -2.5
958,996 + +0.3
958,996 + -2.6
959,012 + -0.7
959,013 - -0.4
959,017 + -1.3
959,139 - -0.0
959,147 - -1.4
959,155 + -0.6
959,164 + -0.0
959,189 + -0.0
959,221 + -0.4
959,233 + +0.1
959,298 - +0.1
959,334 - -2.7
959,354 - -0.5
959,355 - -2.3
959,357 + +0.3
959,391 - -2.5
959,396 - -1.0
959,438 + -2.3
959,443 - -2.0
959,454 + -2.0
959,472 - -0.8
959,646 - 16105 mRNA_7737 0.16 -1.6
959,726 - 16105 mRNA_7737 0.26 -1.0
959,874 + 16105 mRNA_7737 0.45 -2.6

Or see this region's nucleotide sequence