Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7749

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16117 and 16118 overlap by 11 nucleotides mRNA_7749: 16117 - Hypothetical Protein, at 981,681 to 982,227 16117 mRNA_7750: 16118 - Hypothetical Protein, at 982,217 to 982,643 16118

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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980,794 - -1.8
980,908 + -2.9
981,051 + -1.3
981,218 + -3.0
981,222 + +0.9
981,224 + -0.4
981,224 + -1.1
981,370 + -2.9
981,647 - -3.5
981,657 - -1.5
981,679 - -0.9
981,828 + 16117 mRNA_7749 0.27 +0.9
981,946 - 16117 mRNA_7749 0.48 -1.2
981,983 - 16117 mRNA_7749 0.55 -1.8
982,244 - -1.3
982,362 - 16118 mRNA_7750 0.34 -0.6
982,392 - 16118 mRNA_7750 0.41 -0.6
982,434 - 16118 mRNA_7750 0.51 -1.2
982,533 + 16118 mRNA_7750 0.74 -1.7
982,668 + -0.4
982,884 - -3.2

Or see this region's nucleotide sequence