Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7758

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16125 and 16126 are separated by 859 nucleotides16126 and 16127 are separated by 194 nucleotides mRNA_7757: 16125 - Hypothetical Protein, at 997,192 to 998,453 16125 mRNA_7758: 16126 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 999,313 to 1,000,093 16126 mRNA_7759: 16127 - K11824 AP2A AP-2 complex subunit alpha, at 1,000,288 to 1,003,990 16127

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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998,722 - -1.9
998,796 + -1.9
998,797 + -1.4
998,817 - -3.1
999,114 - -0.7
999,260 + -1.7
999,269 - -1.2
999,534 + 16126 mRNA_7758 0.28 -3.1
999,694 - 16126 mRNA_7758 0.49 +0.2
999,700 - 16126 mRNA_7758 0.50 -1.6
999,792 - 16126 mRNA_7758 0.61 -2.4
999,828 - 16126 mRNA_7758 0.66 -1.2
999,838 - 16126 mRNA_7758 0.67 -1.3
1,000,174 + -1.3
1,000,430 + +1.4
1,000,568 + -0.4
1,000,899 + 16127 mRNA_7759 0.17 -1.4

Or see this region's nucleotide sequence