Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7771

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16138 and 16139 are separated by 834 nucleotides16139 and 16140 are separated by 230 nucleotides mRNA_7770: 16138 - K09250 CNBP cellular nucleic acid-binding protein, at 1,026,696 to 1,027,876 16138 mRNA_7771: 16139 - HMMPfam-SPFH domain / Band 7 family-PF01145,PRINTS-Stomatin signature-PR00721,SMART-prohibitin homologues-SM00244,SUPERFAMILY--SSF117892, at 1,028,711 to 1,030,372 16139 mRNA_7772: 16140 - Hypothetical Protein, at 1,030,603 to 1,031,384 16140

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,027,942 + -1.0
1,027,944 - -1.4
1,027,985 + -3.1
1,028,093 - -0.7
1,028,113 + -1.9
1,028,113 - -2.5
1,028,266 + +0.7
1,028,518 - -2.1
1,028,525 + -1.5
1,028,535 - -0.0
1,028,536 + +0.7
1,028,536 + -2.0
1,028,548 - -0.5
1,028,548 - -1.3
1,028,550 - -1.8
1,028,551 - +0.2
1,028,552 + -2.4
1,028,560 + -0.3
1,028,571 + -0.6
1,028,573 + -1.8
1,028,600 + -1.8
1,028,684 - +1.5
1,028,693 - -2.6
1,028,856 - -1.1
1,028,929 - 16139 mRNA_7771 0.13 -1.0
1,029,033 - 16139 mRNA_7771 0.19 -3.9
1,029,132 + 16139 mRNA_7771 0.25 -2.3
1,029,291 - 16139 mRNA_7771 0.35 -1.2
1,029,432 + 16139 mRNA_7771 0.43 -2.0
1,029,635 - 16139 mRNA_7771 0.56 -1.2
1,030,174 - 16139 mRNA_7771 0.88 -0.6
1,030,183 + 16139 mRNA_7771 0.89 -1.5
1,030,609 - -1.0
1,030,913 - 16140 mRNA_7772 0.40 -1.2

Or see this region's nucleotide sequence