Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7775

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16142 and 16143 are separated by 863 nucleotides16143 and 16144 are separated by 221 nucleotides mRNA_7774: 16142 - KOG1546 Metacaspase involved in regulation of apoptosis, at 1,033,598 to 1,035,909 16142 mRNA_7775: 16143 - K01673 cynT, can carbonic anhydrase, at 1,036,773 to 1,037,366 16143 mRNA_7776: 16144 - K01899 LSC1 succinyl-CoA synthetase alpha subunit, at 1,037,588 to 1,039,295 16144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,036,197 + +0.3
1,036,213 - -1.4
1,036,214 - -1.2
1,036,215 - -0.6
1,036,217 - -0.4
1,036,233 + -0.1
1,036,243 - +1.0
1,036,245 + -0.4
1,036,349 - -0.5
1,036,944 + 16143 mRNA_7775 0.29 -2.8
1,036,946 + 16143 mRNA_7775 0.29 -2.5
1,036,953 + 16143 mRNA_7775 0.30 -2.2
1,037,236 + 16143 mRNA_7775 0.78 -2.9
1,037,239 - 16143 mRNA_7775 0.78 +0.4
1,037,250 + 16143 mRNA_7775 0.80 -1.6
1,037,251 - 16143 mRNA_7775 0.80 -0.7
1,037,254 + 16143 mRNA_7775 0.81 -1.5
1,037,265 + 16143 mRNA_7775 0.83 -0.5
1,037,375 + -1.2
1,037,386 + -0.9
1,037,507 + +1.6
1,037,516 - +0.4
1,037,518 - -0.5
1,037,520 - -1.3
1,037,539 + -0.3
1,037,541 + -0.5
1,037,545 + -2.8
1,037,545 - -0.2
1,037,549 + -3.1
1,037,557 - -2.6
1,037,564 - -0.1

Or see this region's nucleotide sequence