Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7837

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16204 and 16205 are separated by 817 nucleotides16205 and 16206 are separated by 307 nucleotides mRNA_7836: 16204 - K02992 RP-S7, MRPS7, rpsG small subunit ribosomal protein S7, at 1,176,848 to 1,177,701 16204 mRNA_7837: 16205 - Hypothetical Protein, at 1,178,519 to 1,178,828 16205 mRNA_7838: 16206 - K01011 TST, MPST, sseA thiosulfate/3-mercaptopyruvate sulfurtransferase, at 1,179,136 to 1,180,563 16206

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,177,665 + -1.8
1,177,722 - -1.0
1,177,793 + -2.6
1,177,824 + -0.2
1,177,825 - -2.7
1,177,859 + -1.8
1,177,861 + -0.5
1,177,908 - -0.6
1,177,932 + -2.9
1,178,126 - -0.5
1,178,275 + -1.7
1,178,276 - -2.4
1,178,431 - -2.7
1,178,460 - +1.2
1,178,754 - 16205 mRNA_7837 0.76 -0.4
1,178,879 - -2.8
1,178,894 + -1.3
1,179,047 - -0.4
1,179,061 + -2.1
1,179,061 - -2.5
1,179,206 - -1.4
1,179,252 + -0.1
1,179,377 - 16206 mRNA_7838 0.17 -3.2
1,179,503 + 16206 mRNA_7838 0.26 -0.8
1,179,505 - 16206 mRNA_7838 0.26 -1.2

Or see this region's nucleotide sequence